Pan-cancer AI-driven Cell-free DNA Sequencing Platform for Reducing Disparities in Early Diagnosis, Molecular Characterization and Surveillance of Multiple Cancer Types

Awarded in 2024
Updated Aug 27, 2025

At a Glance

This project aims to address disparities in cancer outcomes by investigating the biology of cancers and the factors that contribute to aggressive cancers or lead to the development of treatment resistance. Researchers will introduce a minimally invasive liquid biopsy testing approach, which is essentially a blood draw, and utilize a new type of testing called fragmentomics to gather more information about a patient’s tumor and patterns of potential treatment resistance or cancer recurrence.

Collaborators: Amy Taylor, MD, assistant professor, Department of Medicine

research icon: microscope and stethoscope
Collaborative Health Sciences Program

Piloting Badger-Seq: A Revolutionary Paradigm for the Genomic Diagnosis of Critically Ill Newborns


Awarded in 2024
Infants born with a rare genetic disorder or birth defect experience high acuity, prolonged hospital stays and a lifetime of health challenges. Molecular diagnosis is key to caring for these infants, and speed is critical. This multidisciplinary team of researchers will use an approach to screening using artificial intelligence and a revolutionary genome sequencing platform to bring state-of-the-art ultra-rapid genome sequencing to infants in hospitals across Wisconsin. Collaborators: April Hall, PhD, assistant professor, Department of Pediatrics, UW–Madison; Vanessa Horner, PhD, associate professor, Department of Pediatrics, UW–Madison; Kim Keppler-Noreuil, MD, professor, Department of Pediatrics, UW–Madison; Irene Ong, PhD, associate professor; Departments of Obstetrics and Gynecology and Biostatistics and Medical Informatics, UW–Madison; Xiangqiang Shao, PhD, assistant professor, Department of Pediatrics, UW–Madison; Bryn Webb, MD, associate professor, Department of Pediatrics, UW–Madison; Krishna Acharya, MBBS, associate professor, Department of Pediatrics, Medical College of Wisconsin; Ulrich Broeckel, MD, professor, Department of Pediatrics, Medical College of Wisconsin; Jessica Scott-Schwoerer, MD, associate professor, Department of Pediatrics, Medical College of Wisconsin; Mark Yandell, PhD, professor, Department of Human Genetics, University of Utah